When an avocado's insides take a dark turn

What you see: A brown area inside your avocado. What it is: The avocado could have been dropped or otherwise bumped; And/or it could be infected. Eat or toss: Cut out the brown area and eat the rest!
The story: No matter how you slice it (har!), the fat end of this avocado has clearly struggled. The tissue is brown, turning black, which means it’s dying or dead and is unlikely to taste very good. The rest of the avocado is still fine, though you may want to taste test the areas with the little brown lines, which we covered in an earlier post. In any event, your avocado toast can proceed, but just with a bit less avocado than you’d hoped.
A number of scenarios could have caused this corner of the avocado to take a dark turn, explained University of Querétaro professor Elhadi M. Yahia. At some point, when it was harvested, processed, moved, displayed or possibly—not to point fingers or anything—even after you purchased it, the avocado could have been hurt. Maybe it was dropped. Maybe it rolled off a display. Maybe it bumped up against a bottle of the olive oil you were going to drizzle on that avocado toast.
An injury Such an injury could have weakened the tissue, causing that corner of the avocado to soften faster. Its cells could have leaked compounds that oxidized to a brown color and would eventually turn black. That could be all we’re seeing in this image.
A pathogen is possible
But, the weakened avocado flesh could have also created an opening for a pathogen, a fungus most likely. (If you ever see such a darkened area at the top of an avocado, it’s also possible that a pathogen snuck in through the stem.)
Or, maybe, Yahia theorized, a sneaky invader was the problem all along. It’s common for a fungus, known as anthracnose, to settle on an avocado early in its life and then….wait for it….wait.
When avocados are young, their skin contains antifungal chemicals, which break down as the fruit ripens. When the avocado softens and the chemical defenses break down, we aren’t the only beings suddenly much more interested in eating the fruit. At this point, a "latent fungal infection" will wake up, work its way through the skin and start growing little tentacles inside the avocado, basically causing rot. (Please find more delicious details about this process, which involves something ominous called a "germ tube" on p. 12 of this master’s thesis.)
Yahia, who has written about post-harvest handling of avocados, wasn’t aware of any food safety risks connected to browning or anthracnose infections in avocados. Whenever rot sets in, any manner of microbes might show up, but he said the pathogens that tend to strike the rich green fruit aren’t known to produce anything harmful to people.
Still, by the time avocado flesh gets this dark, it’s not going to taste very good. Those oxidation reactions, some of them involving fats and producing rancid flavors, always leave avocados worse for wear. So, cut off the brown area, consider a taste test and toast on.
SOURCES: Elhadi M. Yahia. Food Science & Post-harvest Handling Professor. University of Querétaro, Mexico. Leader of the Phytochemicals and Nutrition Laboratory. Hot Water Drenching of ‘Hass’ Avocados for Rot Control. MSc Thesis by Emma Terander. Horticulture Program. Institute for Plant Science. Alnarp Sweden.
No wonder! He's suffering from a bruised avo.